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HMM Search

HMM Search is a multiplatform GUI wrapper for the famous HMMER library This wrapper allows to build and calibrate HMMER profiles and search signals in DNA and proteins sequences using these profiles.
The result of the searching is saved and visualized as sequence annotations.
Today we have only Windows binaries of HMM Search but as soon as Linux version of GenomeBrowser will be available the Linux binaries version will be available.
Project files are distributed under "GNU General Public License"

Screenshots:


Building HMM profile from alignment file.



Searching signals in a sequence using HMM profile.




The result of the searching is saved and visualized as sequence annotations.


 Announcement
Febrary, 17, 2006
Find ME 1.0 plugin released.
Search and predict LTR mobile elements in DNA sequences.
April, 10, 2005
The site is lauched!
 News & Events
September, 29, 2005
ORF Marker plugin updated to version 1.1.
GenomeBrowser 1.1 version compatible.
September, 29, 2005
HMM Search plugin 1.1 released.
GenomeBrowser 1.1 compatibility + bugfixing.
April, 24, 2005
The first version of HMM Search plugin released
Copyright 2005, Mikhail Fursov mike.fursov@gmail.com
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