Genome analysis software

Site Home
	Find ME
	HMM Search
	ORF Marker
	WEB Annotate
	Classifier
	GraphIt

Project goals
This project is aimed to create free bioinformatics applications that

Visual

Interactive

Multiplatform

Incapsulate fast and optimized algorithms

Simple in usage, open source and free

Today we use Open API of UniPro GenomeBrowser and Trolltech QT library as basis for independent modules development.
All sofware developed in this project is distributed under GNU General Public License and could be used freely by anyone.

Brief overview of modules

Find ME - search and predict LTR mobile elements(ME) in DNA sequence.

HMM Search - search signals in dna and protein sequences using Hidden Markov Models.

ORF Marker - simple tool to find ORFs in selected sequence regions.

WEB Annotate - analyze sequence regions by using available Internet databases.

Classifier - group a set of given sequences.

GraphIt - pack of sequence statistical algorithms implementations.

Announcement

Febrary, 17, 2006
Find ME 1.0 plugin released.
Search and predict LTR mobile elements in DNA sequences.

April, 10, 2005
The site is lauched!

News & Events

September, 29, 2005
ORF Marker plugin updated to version 1.1.
GenomeBrowser 1.1 version compatible.

September, 29, 2005
HMM Search plugin 1.1 released.
GenomeBrowser 1.1 compatibility + bugfixing.

April, 24, 2005
The first version of HMM Search plugin released